Urinary Tract Infections in Children
Guideline to the approach to urinary tract infections in children
Lead Authors: Dr Shaegan Irusen & Dr Christel du Buisson
Acknowledgements: Dr PJ Sinclair, Dr P Nourse, Dr P Gajjar & Prof M McCulloch
These guidelines were developed in May 2015.
Summary algorithm
Introduction
Clinical presentation and examination
Further assessment
Differential diagnosis
Investigations
Management
Summary algorithm

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Introduction
Urinary tract infections (UTI) are very common affecting 3% of boys & 11% of girls. UTI are divided into lower (urethritis and cystitis) & upper (ureteritis and pyelonephritis) tract infections. In infants & toddlers, irritability & fever (> 38oC) is suggestive of an upper tract infection. UTI is often found in patients with acute respiratory illness, gastroenteritis & malnutrition therefore screening with urine dipsticks is essential
Clinical presentation & examination
- Neonates/Infants: fever, lethargy, irritability & poor feeding. Abnormal antenatal renal ultrasound?
- Toddlers/children: suprapubic pain, renal angle tenderness, flank pain, frequency, incontinence, vomiting & diarrhoea
Further assessment
RISK factors: renal tract anomalies, immunocompromised (e.g. HIV co-infection or malnutrition), uncircumcised boys.
Differential Diagnosis
The symptoms & signs of UTI in children can be non-specific, it is therefore essential keep an open mind about the potential underlying diagnosis which could include:
- Appendicitis
- Sepsis/septicaemia
- Acute gastroenteritis
- Viral illness
Investigations
URINE COLLECTION:
Bag urine samples should be used only for initial screening with urine dipsticks.
If a culture needs to be sent a sterile sample must be taken
STERILE Urine Sample Collection
- Potty trained: Midstream urine collection
- Not potty trained: Sterile in-out catheter sample or suprapubic aspiration or clean catch
- Send labelled sample to the laboratory for microscopy, culture & sensitivity testing
Interpreting the Culture result – UTI confirmed if:
- Supra-pubic sample: ANY gram negative or >5000cfu/ml gram positive organism is significant
- Midstream urine sample: >100 000 cfu/ml organisms are significant
- Catheter sample: >10 000cfu organisms are significant
NEVER SEND A URINE SAMPLE FROM A BAG SPECIMEN FOR CULTURE.
THERE IS VERY HIGH RATE OF FALSE POSITIVE CULTURES
IMAGING: Who Need’s Imaging?
- Define the at risk patient:
- Recurrent urinary tract infections
- 2 or more episodes of pyelonephritis
- 1 episode of pyelonephritis and lower tract infection
- 3 or more episodes of lower tract infection
- Less than 3 years with atypical infections
- Failure to respond to treatment within 48hrs
- Poor urine output
- Palpable bladder or renal mass
- Non E. coli uropathogens
- Renal dysfunction
- Severe sepsis
- Recurrent urinary tract infections
All patients with culture positive confirmed UTI will need a renal tract ultrasound
- This can be done as an outpatient at a level 1 hospital. Patients with structural abnormalities will require referral to a level 2 hospital.
Further imaging requirements depending on progress:

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Management
Patients < 3 months old, septic, immunocompromised or vomiting
- Admit to a paediatric ward
- Check full blood count, renal function and inflammatory markers
- Blood culture if possible
- Initiate IVI antibiotics (ceftriaxone 50mg/kg daily or cefotaxime 50mg/kg 6 hourly) for 7-10 days
- Inpatient: follow up on urine and blood culture and renal ultrasound
Patients > 3 months old
- Lower tract UTI:
- discharge on 5-7 days of oral antibiotics (e.g. cephalosporin, quinolone or co-amoxiclav)
- Follow up as outpatient for urine culture results +/- renal ultrasound
- Upper tract UTI:
- consider discharge on 5-7 days of oral antibiotics (e.g. cephalosporin, quinolone or co-amoxiclav)
- Follow up as outpatient for urine culture results +/- renal ultrasound
If unstable or signs of severe sepsis, refer and admit to a paediatric unit as per patient < 3 months old.
References
- Zorc JJ, Kiddoo DA, Shaw KN. Diagnosis and Management of Paediatric Urinary Tract Infections. Clin Microbiology Reviews. 2005 April; 18 (2): 417-422.
- Subcommittee on Urinary Tract Infection, Steering committee on quality improvement and management. Urinary Tract Infection: Clinical Practice Guideline for the Diagnosis and Management of the Initial UTI in Febrile Infants and Children 2 to 24 months. Paediatrics. 2011 September; 128 (3): 595-610.
- UTI Protocol: Tygerberg Children’s Hospital
- Wallis LA, Reynolds TA. AFEM Handbook of Acute and Emergency Care. SA: Oxford University Press; 2013.
- Motala C, Davidson A, Figaji A, Levin M, editors. Handbook of Paediatrics. 7th edition. South Africa: Oxford University Press; 2012.